RE: New patents update2 Jan 2026 13:36
WO2026002988 - Fibroblast Activation Protein Alpha Binder Proteins
Inventors: JONES, David, SPENCE, Graham Robert Pye-Smith, JUSKAITE, Victoria, PINTO, Manuel, SAMMON, Douglas, EDWARDS, Ruairidh, BUIST, Hanna
Abstract: (EN) The technology relates to polypeptides comprising a scaffold comprising a sequence having at least 90% identity to the amino acid sequence of human Stefin A, wherein the scaffold sequence includes (a) an insertion of an amino acid between amino acid positions corresponding to M1 and I2 of the amino acid sequence of human Stefin A and (b) a mutation at an amino acid position corresponding to N32 of the amino acid sequence of human Stefin A, and a heterologous peptide. The technology also relates to human Stefin A variants that bind to fibroblast activation protein alpha and/or human serum albumin.
BACKGROUND
[3] AFFIMER® proteins are small, engineered proteins based on human Stefin A that bind to specific target molecules with high affinity and specificity. They are part of a class of binding proteins known as alternative scaffolds or non-antibody binding proteins. AFFIMER® proteins offer several advantages over other binder proteins, such as antibodies, including size and stability, ease of production, versatility, customizability, and lack of post-translational modification.
[4] AFFIMER® proteins are smaller and often more stable than antibodies, making them easier to produce and manipulate in various experimental conditions. AFFIMER® proteins can be produced in large quantities using bacterial expression systems, for example, which is often more cost-effective and scalable than antibody production. AFFIMER® proteins can be engineered to bind a wide range of targets, including proteins, small molecules, and even cells. Their binding characteristics can be finetuned through protein engineering, allowing for the development of highly specific reagents for research, diagnostic, and therapeutic applications. Lastly, unlike antibodies, AFFIMER® proteins do not require post-translational modifications, simplifying their production.
SUMMARY
[5] Provided herein, in some aspects, are polypeptide scaffolds, for example, AFFIMER® polypeptide scaffolds, based on variants of human Stefin A, which include modification(s) that prevent amino terminal acetylation/oxidation and increase thermal stability, relative to the naturally occurring human Stefin A protein. Thus, the polypeptide scaffolds provided herein are designed to exhibit improved stability, binding affinity, and manufacturability, relative to other polypeptide scaffolds based on variants of human Stefin A.
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