RE: Avacta patent19 Sep 2025 18:38
(...continued)
Further obstacles arise when attempting to detect and/or quantify a target small molecule in a so-called ‘sandwich’ format. Most binders in such a complex will effectively cover all available epitopes on the target small molecule. Therefore, most assays rely on competition between the two binders for binding to the small molecule. That results in an indirect readout. In such assays, the readout depends on a decrease in signal that correlates with an increase in target analyte. However, such indirect readouts resulting from competitive binding of two binders to the same target analyte are inherently less specific and/or less sensitive. Importantly, a direct readout also provides a broader dynamic range and/or a reduced susceptibility to cross-reactive binding.
There is a need in the art for approaches to detect and/or quantify target small molecules by assays that produce a direct positive readout, i.e., in which an increase in signal directly correlates with an increase in target analyte.
SUMMARY OF THE INVENTION
The present invention provides recombinant (first) binding polypeptides (e.g., Affimer® polypeptides) and methods of using them to detect small molecule analytes in biological samples with high specificity and sensitivity. The recombinant first binding polypeptides of the invention bind specifically to a complex of a target small molecule with a different (second) binding polypeptide (e.g. an antibody or a naturally occurring binding protein) and, in doing so, can be used to specifically detect the target small molecule. Recombinant first binding polypeptides of the invention are capable of specifically detecting target small molecules with high sensitivity and specificity, including target small molecules having a molecular weight of 2 kDa or less.
Thus, the present invention provides reagents, means and methods for detecting a target small molecule (including those with molecular weights of 2 kDa or less) that avoid detection of cross-reactive, structurally similar non-target small molecules and/or that avoid detection of the second binding polypeptide not specifically bound to the target small molecule.
In one aspect, the present invention provides a recombinant first binding polypeptide that specifically binds to a complex of a second binding polypeptide and a target small molecule,
wherein the recombinant first binding polypeptide is a recombinantly engineered variant of cystatin polypeptide,
wherein the second binding polypeptide binds specifically to the target small molecule, and
wherein the target small molecule has a molecular weight of 2 kDa or less, optionally wherein the target small molecule is a steroid, an organic compound, a hormone, a hapten, a vitamin, a biogenic amine, an antibiotic, a mycotoxin, a cyanotoxin, a nitro compound, a nucleotide or an amino acid.
(continued...)